These are good survey papers on miRNA tools and frameworks:
- Tools4miRs – one place to gather all the tools for miRNA analysis (Bioinformatics, 2016)
- Bioinformatic tools for microRNA dissection (Nucleic Acids Research, 2015)
- A Review of Computational Tools in microRNA Discovery (Frontiers in Genetics, 2015)
Tools
- Omics tools
- miRandb: a Resource of Online Services for miRNA Research; (tool)
- Gathering miRNA-TF associations via NLP (Under the heading: Automatic extraction of MTIs from the literature for further manual review)