Perpetual list of things to do

The following list of things were stored in the form of many many many tabs on my browser! I had to move them somewhere so that my browser would not hang; so here they are…

At any point of time, I might be doing something from the below. This list is ever-growing. Sigh!

• Papers (not in any order of importance)
  1. The integration of weighted human gene association networks based on link prediction
  2. Regulatory network analysis of microRNAs and genes in imatinib-resistant chronic myeloid leukemia
  3. Graphical Models – MI Jordan
  4. Inferring Cellular Networks Using Probabilistic Graphical Models
  5. Maximizing the spread of influence through social network
  6. Identification of miRNA-mRNA regulatory modules by exploring collective group relationships
  7. Probabilistic Graphical Modeling in Systems Biology: A Framework for Integrative Approaches
  8. GOexpress: an R/Bioconductor package for the identification and visualisation of robust gene ontology signatures through supervised learning of gene expression data
  9. A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic Data
  10. Network Consistency Projection for Human miRNA-Disease Associations Inference
  11. MicroRNA and gene co-expression networks characterize biological and clinical behavior of rhabdomyosarcomas
  12. Tissue Specificity of Human Disease Module
  13. A Bayesian model to infer risk variants in related traits 3 using summary statistics and functional genomic annotations
  14. A Framework for integrating multiple biological networks to predict microRNA-disease associations
  15. Optimal infinite-horizon control for probabilistic Boolean networks
  16. Integrative Analysis of Sex-Specific microRNA Networks Following Stress in Mouse Nucleus Accumbens
  17. Prediction of MicroRNA-Disease Associations Based on Social Network Analysis Methods
  18. Analysis of microRNA and Gene Expression Profiles in Multiple Sclerosis: Integrating Interaction Data to Uncover Regulatory Mechanisms
  19. Inter-generational Contact From a Network Perspective
  20. Notes on Diffy Qs: Differential Equations for Engineers
  21. Bayesian Networks in R with Applications in Systems Biology
• Coding projects
  1. How WGCNA can be used to compare and contrast two networks
  2. Gene set enrichment analysis with topGO
  3. Bayesian Networks: With Examples in R (book)
  4. Bayesian network in R: Introduction
  5. Gene Expression Analysis with R and Bioconductor: from measurements to annotated lists of interesting genes (slides)
  6. Data visualization – D3.js
• Videos
  1. Introduction to Probabilistic Modelling and Machine Learning
  2. Interesting website and tutorial on “Web scraping with R”
  3. Network analysis: Diffusion and random walks on graphs
• Misc.
  1. Research opportunities in Germany (post-docs, academia)
  2. Post-docs at a non-university research institute